scispy.tl.sdata_rotate

scispy.tl.sdata_rotate(sdata, rotation_angle=0, obs_x='center_x', obs_y='center_y', obsm_key='spatial', target_coordinates='microns')

Apply a rotation to sdata object elements + [obs_x,obs_y] sdata.table.obs + sdata.table.obsm[obsm_key]

Parameters:

• sdata (SpatialData) – SpatialData object.

• rotation_angle (int (default: 0)) – horary rotation angle

• obs_x (str (default: 'center_x')) – x coordinate in sdata.table.obs

• obs_y (str (default: 'center_y')) – y coordinate in sdata.table.obs

• obsm_key (str (default: 'spatial')) – key in sdata.table.obsm storing spatial coordinates for squidpy plots

• target_coordinates (str (default: 'microns')) – target_coordinates system of sdata object