scispy.tl.sdata_querybox

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scispy.tl.sdata_querybox#

scispy.tl.sdata_querybox(sdata, xmin=0, xmax=0, ymin=0, ymax=0, set_origin=True, x_origin=0, y_origin=0, obs_x='center_x', obs_y='center_y', target_coordinates='microns')#

Subset an sdata object to the coordinates box received, then set origin to (x_origin,y_origin)

Parameters:

  • sdata (SpatialData) – SpatialData object.

  • xmin (int (default: 0)) – xmin

  • xmax (int (default: 0)) – xmax

  • ymin (int (default: 0)) – ymin

  • ymax (int (default: 0)) – ymax

  • set_origin (bool (default: True)) – wether or not translate coordinate to origin (x_origin,y_origin)

  • x_origin (int (default: 0)) – define new x origin

  • y_origin (int (default: 0)) – define new y origin

  • obs_x (str (default: 'center_x')) – x coordinate in sdata.table.obs

  • obs_y (str (default: 'center_y')) – y coordinate in sdata.table.obs

  • target_coordinates (str (default: 'microns')) – target_coordinates

Return type:

SpatialData

Returns:

SpatialData object

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