scispy.tl.add_shapes_from_hdf5

scispy.tl.add_shapes_from_hdf5#

scispy.tl.add_shapes_from_hdf5(sdata=None, path=None, target_coordinates='microns')#

Add shapes from cell boundaries hdf5 files to spatialdata object.

Parameters:

  • sdata (Optional[SpatialData] (default: None)) – SpatialData object.

  • path (Optional[str] (default: None)) – path to vizgen results files containing a cell_boundaries folder.

  • target_coordinates (str (default: 'microns')) – target coordinates system.

Contents