scispy.pl.plot_sdata

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scispy.pl.plot_sdata#

scispy.pl.plot_sdata(sdata, color_key='celltype', feature_key='gene', point_size=1, figsize=(12, 6), outline=False, outline_width=1.0, outline_color='red', shape_keys=None, shape_palette=None, shape_groups=None, cmap=None, point_groups=None, grid=False, save=False, target_coordinates='microns', save_format='pdf')#

Plot sdata object (i.e. embedding and polygons). This should always works if well synchronized sdata object

Parameters:

  • sdata (SpatialData) – SpatialData object.

  • color_key (str (default: 'celltype')) – color key from .table.obs

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