scispy.io.load_cosmx

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scispy.io.load_cosmx#

scispy.io.load_cosmx(path, dataset_id='R5941_ColonTMA', feature_key='target')#

Load cosmx data as SpatialData object

Parameters:

  • path (str) – path to folder.

  • dataset_id (str (default: 'R5941_ColonTMA')) – dataset_id.

  • feature_key (str (default: 'target')) – default column for feature name in transcripts.

Return type:

SpatialData

Returns:

SpatialData object

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